STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00534Related to VPS9 (Involved in vacuole trafficking). (691 aa)    
Predicted Functional Partners:
PIIN_02545
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.932
PIIN_11748
Alginate_lyase domain-containing protein.
    
 0.911
PIIN_01864
Related to GTP-binding protein Rab5c.
    
 0.911
PIIN_02562
Probable VPS21-Rab5-like GTPase involved in vacuolar protein sorting.
    
 0.911
PIIN_08096
Probable GTP-binding protein ypt5.
    
 0.911
PIIN_02709
Related to GCD7-translation initiation factor eIF2b, 43 kDa subunit; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.890
PIIN_02224
Related to vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.
    
 0.782
PIIN_03022
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.761
PIIN_02458
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.760
PIIN_02621
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
   
 0.752
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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