STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD86561.1Polysaccharide synthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
AMD88363.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.599
AMD88419.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.567
AMD87382.1
Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.548
AMD88082.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
AMD88233.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
AMD86562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.481
purK
Phosphoheptose isomerase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR); Belongs to the PurK/PurT family.
       0.474
AMD87814.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
Your Current Organism:
Actinomyces radicidentis
NCBI taxonomy Id: 111015
Other names: A. radicidentis, Actinomyces radicidentis Collins et al. 2001 emend. Nouioui et al. 2018, Actinomyces sp. CCUG 36733, Actinomyces sp. CCUG 36733T, CCUG 36733, CIP 106352, DSM 15433
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