STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMO_0295Binding-protein-dependent transport systems inner membrane component. (318 aa)    
Predicted Functional Partners:
hbpA
Extracellular solute-binding protein.
 
 0.990
dppC
Dipeptide transport system permease protein dppC.
  
 0.983
gsiB-4
Extracellular solute-binding protein, family 5.
 
 0.974
appD
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 0.919
dppF
Putative oligopeptide ABC transporter (ATP binding protein); Belongs to the ABC transporter superfamily.
  
 0.897
ddpC
Binding-protein-dependent transport systems inner membrane component.
  
 0.875
appC-5
ABC transporter, membrane spanning protein (oligopeptide).
  
 0.870
dppC-2
Peptide/nickel transport system permease protein.
  
 0.866
appC-2
ABC transporter permease.
  
 0.862
appC-3
ABC transporter permease protein.
  
 0.860
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.