STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMO_0434ABC transporter, periplasmic solute-binding protein. (375 aa)    
Predicted Functional Partners:
potC-2
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.927
potB
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.914
potA-2
ABC transporter related protein; Belongs to the ABC transporter superfamily.
 
  
 0.824
hisD-2
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
     0.716
ydcU
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.535
ydcV
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.523
potH
Binding-protein-dependent transport systems inner membrane component.
  
  
 0.448
potH-2
Binding-protein dependent transport system inner membrane protein.
  
  
 0.448
potB-2
Binding-protein-dependent transport systems inner membrane component.
  
  
 0.448
potB-3
Binding-protein-dependent transport systems inner membrane component.
  
  
 0.448
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.