Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TMO_0377 | ynjF | TMO_0377 | TMO_1158 | Hypothetical protein. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.713 |
TMO_1157 | ynjF | TMO_1157 | TMO_1158 | Hypothetical protein. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.500 |
TMO_1159 | ydjF | TMO_1159 | TMO_1160 | Hypothetical protein. | Transcriptional regulator, DeoR family. | 0.773 |
TMO_1159 | ynjF | TMO_1159 | TMO_1158 | Hypothetical protein. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.485 |
eryA | guaB | TMO_0487 | TMO_1438 | Polyketide synthase. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.874 |
eryA | ydjF | TMO_0487 | TMO_1160 | Polyketide synthase. | Transcriptional regulator, DeoR family. | 0.478 |
eryA | ynjF | TMO_0487 | TMO_1158 | Polyketide synthase. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.558 |
guaB | eryA | TMO_1438 | TMO_0487 | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | Polyketide synthase. | 0.874 |
guaB | ynjF | TMO_1438 | TMO_1158 | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.489 |
ydjF | TMO_1159 | TMO_1160 | TMO_1159 | Transcriptional regulator, DeoR family. | Hypothetical protein. | 0.773 |
ydjF | eryA | TMO_1160 | TMO_0487 | Transcriptional regulator, DeoR family. | Polyketide synthase. | 0.478 |
ydjF | ynjF | TMO_1160 | TMO_1158 | Transcriptional regulator, DeoR family. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.485 |
ydjX | ynjB | TMO_2718 | TMO_3337 | Mercuric reductase. | ABC transporter, periplasmic binding protein. | 0.844 |
ydjX | ynjC | TMO_2718 | TMO_3336 | Mercuric reductase. | Inner membrane ABC transporter permease protein YnjC. | 0.714 |
ydjX | ynjD | TMO_2718 | TMO_3335 | Mercuric reductase. | ABC transporter related protein. | 0.443 |
ydjX | ynjF | TMO_2718 | TMO_1158 | Mercuric reductase. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.695 |
ynjB | ydjX | TMO_3337 | TMO_2718 | ABC transporter, periplasmic binding protein. | Mercuric reductase. | 0.844 |
ynjB | ynjC | TMO_3337 | TMO_3336 | ABC transporter, periplasmic binding protein. | Inner membrane ABC transporter permease protein YnjC. | 0.964 |
ynjB | ynjD | TMO_3337 | TMO_3335 | ABC transporter, periplasmic binding protein. | ABC transporter related protein. | 0.960 |
ynjB | ynjF | TMO_3337 | TMO_1158 | ABC transporter, periplasmic binding protein. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.806 |
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