STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMO_1209Branched-chain amino acid transport. (106 aa)    
Predicted Functional Partners:
ygaZ
AzlC family protein.
  
  
 0.916
TMO_1207
Hypothetical protein.
       0.654
TMO_2041
Putative membrane protein.
  
  
 0.646
pepN
Membrane alanyl aminopeptidase.
       0.505
TMO_1202
TRAP dicarboxylate transporter- DctP subunit.
       0.421
TMO_1203
Hypothetical protein.
       0.421
TMO_1204
TRAP dicarboxylate transporter, DctM subunit.
       0.421
TMO_1205
long-chain-fatty-acid--CoA ligase.
       0.421
TMO_1206
AMP-dependent synthetase and ligase.
       0.421
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.