STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pchR-3AraC family transcriptional regulator. (334 aa)    
Predicted Functional Partners:
virF
Transcriptional regulator, AraC family.
  
     0.747
thcR
Transcriptional regulator, AraC family.
  
     0.685
ybfI
AraC family transcriptional regulator.
  
     0.670
rhaS
Transcriptional regulator, AraC family.
  
     0.592
ybfI-2
Transcriptional regulator, AraC family.
  
     0.521
ykvY
Peptidase M24.
       0.506
TMO_1352
Major facilitator transporter.
       0.506
ydeE
Transcriptional regulatory protein.
 
     0.505
TMO_3377
Transcriptional regulator, AraC family.
  
     0.456
TMO_1350
Pirin; Belongs to the pirin family.
 
     0.412
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.