STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMO_1379Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)    
Predicted Functional Partners:
TMO_0693
Peroxisomal multifunctional enzyme type 2.
 
 0.918
ndoR
Oxidoreductase FAD-binding subunit.
 
 0.829
eryA
Polyketide synthase.
  
 
 0.655
TMO_1378
Aminoglycoside phosphotransferase.
 
 
 0.645
lcfB-2
acyl-CoA synthase.
 
   0.575
TMO_1380
Nuclear receptor binding factor 1.
  
   0.571
dhbF
Syringomycin synthetase.
 
 
 0.556
yhfT
fatty-acyl-CoA synthase.
  
   0.486
fabD
S-malonyltransferase.
 
 
 0.457
fruK
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.453
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
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