Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TMO_1380 | TMO_1890 | TMO_1380 | TMO_1890 | Nuclear receptor binding factor 1. | Oxidoreductase, zinc-binding dehydrogenase family. | 0.731 |
TMO_1380 | eryA | TMO_1380 | TMO_0487 | Nuclear receptor binding factor 1. | Polyketide synthase. | 0.610 |
TMO_1890 | TMO_1380 | TMO_1890 | TMO_1380 | Oxidoreductase, zinc-binding dehydrogenase family. | Nuclear receptor binding factor 1. | 0.731 |
TMO_1890 | eryA | TMO_1890 | TMO_0487 | Oxidoreductase, zinc-binding dehydrogenase family. | Polyketide synthase. | 0.610 |
TMO_1890 | virF | TMO_1890 | TMO_1891 | Oxidoreductase, zinc-binding dehydrogenase family. | Transcriptional regulator, AraC family. | 0.543 |
TMO_1890 | yfmJ | TMO_1890 | TMO_0739 | Oxidoreductase, zinc-binding dehydrogenase family. | NADP-dependent dehydrogenase. | 0.504 |
eryA | TMO_1380 | TMO_0487 | TMO_1380 | Polyketide synthase. | Nuclear receptor binding factor 1. | 0.610 |
eryA | TMO_1890 | TMO_0487 | TMO_1890 | Polyketide synthase. | Oxidoreductase, zinc-binding dehydrogenase family. | 0.610 |
eryA | yfmJ | TMO_0487 | TMO_0739 | Polyketide synthase. | NADP-dependent dehydrogenase. | 0.649 |
virF | TMO_1890 | TMO_1891 | TMO_1890 | Transcriptional regulator, AraC family. | Oxidoreductase, zinc-binding dehydrogenase family. | 0.543 |
yfmJ | TMO_1890 | TMO_0739 | TMO_1890 | NADP-dependent dehydrogenase. | Oxidoreductase, zinc-binding dehydrogenase family. | 0.504 |
yfmJ | eryA | TMO_0739 | TMO_0487 | NADP-dependent dehydrogenase. | Polyketide synthase. | 0.649 |