STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfGPutative PAS/PAC sensor protein. (113 aa)    
Predicted Functional Partners:
TMO_1904
Multi-sensor signal transduction histidine kinase.
 
     0.944
TMO_0917
GGDEF domain-containing protein.
 
 
 0.793
cph2
Phytochrome-like protein cph2.
 
 
 0.790
yddV
Diguanylate cyclase.
 
   
 0.788
TMO_1254
GGDEF family protein.
 
   
 0.775
TMO_1668
Response regulator.
 
 
 0.770
ylaB
Putative signaling membrane protein.
  
     0.662
yhjK
Signal transduction protein.
 
  
 0.659
TMO_0158
PAS/PAC sensor hybrid histidine kinase.
 
  
 0.641
TMO_1924
Sensor protein.
 
   
 0.621
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.