Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TMO_0158 | TMO_1127 | TMO_0158 | TMO_1127 | PAS/PAC sensor hybrid histidine kinase. | Cell cycle histidine kinase CckA. | 0.985 |
TMO_0158 | TMO_1227 | TMO_0158 | TMO_1227 | PAS/PAC sensor hybrid histidine kinase. | Chemotaxis protein methyltransferase CheR. | 0.774 |
TMO_0158 | cheA | TMO_0158 | TMO_1223 | PAS/PAC sensor hybrid histidine kinase. | CheA Signal transduction histidine Kinases (STHK). | 0.990 |
TMO_0158 | cheY-2 | TMO_0158 | TMO_1225 | PAS/PAC sensor hybrid histidine kinase. | CheY-like receiver. | 0.959 |
TMO_0158 | dhkK | TMO_0158 | TMO_1915 | PAS/PAC sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.992 |
TMO_0158 | divK | TMO_0158 | TMO_2560 | PAS/PAC sensor hybrid histidine kinase. | Response regulator receiver protein. | 0.944 |
TMO_0158 | mprA | TMO_0158 | TMO_0026 | PAS/PAC sensor hybrid histidine kinase. | Two component transcriptional regulator, winged helix family. | 0.985 |
TMO_0158 | pdhS | TMO_0158 | TMO_1930 | PAS/PAC sensor hybrid histidine kinase. | Sensor protein. | 0.987 |
TMO_0158 | phoB | TMO_0158 | TMO_3510 | PAS/PAC sensor hybrid histidine kinase. | Response regulator. | 0.983 |
TMO_0158 | pleD-2 | TMO_0158 | TMO_2559 | PAS/PAC sensor hybrid histidine kinase. | Response regulator With diguanylate cyclase (GGDEF) domain protein. | 0.985 |
TMO_1127 | TMO_0158 | TMO_1127 | TMO_0158 | Cell cycle histidine kinase CckA. | PAS/PAC sensor hybrid histidine kinase. | 0.985 |
TMO_1127 | TMO_1227 | TMO_1127 | TMO_1227 | Cell cycle histidine kinase CckA. | Chemotaxis protein methyltransferase CheR. | 0.853 |
TMO_1127 | cheA | TMO_1127 | TMO_1223 | Cell cycle histidine kinase CckA. | CheA Signal transduction histidine Kinases (STHK). | 0.979 |
TMO_1127 | dhkK | TMO_1127 | TMO_1915 | Cell cycle histidine kinase CckA. | Multi-sensor hybrid histidine kinase. | 0.989 |
TMO_1127 | divK | TMO_1127 | TMO_2560 | Cell cycle histidine kinase CckA. | Response regulator receiver protein. | 0.735 |
TMO_1127 | mprA | TMO_1127 | TMO_0026 | Cell cycle histidine kinase CckA. | Two component transcriptional regulator, winged helix family. | 0.673 |
TMO_1127 | pdhS | TMO_1127 | TMO_1930 | Cell cycle histidine kinase CckA. | Sensor protein. | 0.971 |
TMO_1127 | phoB | TMO_1127 | TMO_3510 | Cell cycle histidine kinase CckA. | Response regulator. | 0.629 |
TMO_1127 | pleD-2 | TMO_1127 | TMO_2559 | Cell cycle histidine kinase CckA. | Response regulator With diguanylate cyclase (GGDEF) domain protein. | 0.884 |
TMO_1227 | TMO_0158 | TMO_1227 | TMO_0158 | Chemotaxis protein methyltransferase CheR. | PAS/PAC sensor hybrid histidine kinase. | 0.774 |
page 1 of 5