STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaRTranscriptional regulator. (271 aa)    
Predicted Functional Partners:
TMO_2087
Protein, possibly involved in aromatic compounds catabolism.
 
    0.806
kipR
Regulatory protein, IclR.
  
     0.771
paaH
3-hydroxybutyryl-CoA dehydrogenase.
 
    0.553
TMO_1150
Allophanate hydrolase subunit 1.
  
    0.546
kipA
Urea amidolyase related protein.
  
    0.530
paaJ
DcaF; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.472
TMO_2088
Hypothetical protein.
       0.471
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.