STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
menElong-chain-fatty-acid--CoA ligase. (586 aa)    
Predicted Functional Partners:
eryA
Polyketide synthase.
 
 0.823
TMO_2422
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   0.684
dhbF
Syringomycin synthetase.
 
0.667
TMO_2420
Hypothetical protein.
       0.548
ytcI
AMP-dependent synthetase and ligase.
 
0.545
fabD
S-malonyltransferase.
    
 0.537
TMO_0622
acetyl-CoA synthetase.
 
 
0.519
TMO_1574
AMP-dependent synthetase and ligase.
 
 
0.493
TMO_0846
AMP-dependent synthetase and ligase.
 
 
0.474
TMO_0632
Peroxisomal bifunctional enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.443
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
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