STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemAGlutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (412 aa)    
Predicted Functional Partners:
Mhar_1275
Uroporphyrinogen III synthase/methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.992
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.
 
 0.991
Mhar_1276
Hydroxymethylbilane synthase.
  
 0.983
Mhar_0163
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
  
 0.963
gltX
Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
 
  
 0.933
Mhar_0165
Hypothetical protein.
     
 0.866
Mhar_0166
Hypothetical protein.
       0.773
Mhar_0162
DNA methylase N-4/N-6 domain protein.
  
    0.749
Mhar_0912
Radical SAM domain protein.
     
 0.745
Mhar_1615
Magnesium-chelatase subunit ChlD.
 
  
 0.719
Your Current Organism:
Methanosaeta harundinacea
NCBI taxonomy Id: 1110509
Other names: M. harundinacea 6Ac, Methanosaeta harundinacea 6Ac, Methanosaeta sp. 6Ac
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