STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HR09_10430Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (784 aa)    
Predicted Functional Partners:
HR09_03505
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.934
HR09_10930
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.925
HR09_03840
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.889
HR09_10320
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.856
HR09_10935
Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
  
 
 0.827
murG
UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 
 0.825
HR09_00700
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.782
HR09_00345
Peptidase M24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.760
HR09_09325
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.753
HR09_09945
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.731
Your Current Organism:
Porphyromonas gulae
NCBI taxonomy Id: 111105
Other names: ATCC 51700, CCUG 47701, DSM 15663, JCM 13865, NCTC 13180, P. gulae, Porphyromonas gulae Fournier et al. 2001 emend. Hahnke et al. 2016, strain Loup 1
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