Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ERT56752.1 | ERT56787.1 | HMPREF1253_1443 | HMPREF1253_1457 | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | Putative LytB protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.971 |
| ERT56752.1 | ERT56795.1 | HMPREF1253_1443 | HMPREF1253_1458 | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | LytB-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.967 |
| ERT56752.1 | ERT57967.1 | HMPREF1253_1443 | HMPREF1253_0417 | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | NUDIX domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.667 |
| ERT56752.1 | fni | HMPREF1253_1443 | HMPREF1253_0425 | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.934 |
| ERT56752.1 | miaA | HMPREF1253_1443 | HMPREF1253_1080 | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.624 |
| ERT56752.1 | uppS | HMPREF1253_1443 | HMPREF1253_1567 | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.974 |
| ERT56787.1 | ERT56752.1 | HMPREF1253_1457 | HMPREF1253_1443 | Putative LytB protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.971 |
| ERT56787.1 | ERT56795.1 | HMPREF1253_1457 | HMPREF1253_1458 | Putative LytB protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | LytB-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.996 |
| ERT56787.1 | ERT57967.1 | HMPREF1253_1457 | HMPREF1253_0417 | Putative LytB protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | NUDIX domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.524 |
| ERT56787.1 | fni | HMPREF1253_1457 | HMPREF1253_0425 | Putative LytB protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.923 |
| ERT56787.1 | uppS | HMPREF1253_1457 | HMPREF1253_1567 | Putative LytB protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.873 |
| ERT56795.1 | ERT56752.1 | HMPREF1253_1458 | HMPREF1253_1443 | LytB-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.967 |
| ERT56795.1 | ERT56787.1 | HMPREF1253_1458 | HMPREF1253_1457 | LytB-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative LytB protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.996 |
| ERT56795.1 | ERT57967.1 | HMPREF1253_1458 | HMPREF1253_0417 | LytB-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | NUDIX domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.524 |
| ERT56795.1 | fni | HMPREF1253_1458 | HMPREF1253_0425 | LytB-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.923 |
| ERT56795.1 | uppS | HMPREF1253_1458 | HMPREF1253_1567 | LytB-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.895 |
| ERT57959.1 | ERT57967.1 | HMPREF1253_0412 | HMPREF1253_0417 | YacP-like NYN domain protein. | NUDIX domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.471 |
| ERT57959.1 | murB | HMPREF1253_0412 | HMPREF1253_0419 | YacP-like NYN domain protein. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.476 |
| ERT57959.1 | thyX | HMPREF1253_0412 | HMPREF1253_0414 | YacP-like NYN domain protein. | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.792 |
| ERT57967.1 | ERT56752.1 | HMPREF1253_0417 | HMPREF1253_1443 | NUDIX domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.667 |
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