Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MHC_00330 | MHC_00340 | MHC_00330 | MHC_00340 | Hypothetical protein. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.786 |
MHC_00330 | MHC_00365 | MHC_00330 | MHC_00365 | Hypothetical protein. | Hypothetical protein. | 0.658 |
MHC_00330 | MHC_00375 | MHC_00330 | MHC_00375 | Hypothetical protein. | Hypothetical protein. | 0.623 |
MHC_00330 | MHC_00380 | MHC_00330 | MHC_00380 | Hypothetical protein. | Hypothetical protein. | 0.623 |
MHC_00330 | dnaE | MHC_00330 | MHC_00350 | Hypothetical protein. | DNA polymerase III, alpha subunit. | 0.789 |
MHC_00330 | dnaX | MHC_00330 | MHC_00335 | Hypothetical protein. | DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.788 |
MHC_00330 | exo | MHC_00330 | MHC_00355 | Hypothetical protein. | 5'-3' exonuclease. | 0.783 |
MHC_00330 | lysS | MHC_00330 | MHC_00345 | Hypothetical protein. | Lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.794 |
MHC_00330 | pth | MHC_00330 | MHC_00360 | Hypothetical protein. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.788 |
MHC_00330 | rpmF | MHC_00330 | MHC_00370 | Hypothetical protein. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.631 |
MHC_00340 | MHC_00330 | MHC_00340 | MHC_00330 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.786 |
MHC_00340 | MHC_00365 | MHC_00340 | MHC_00365 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.658 |
MHC_00340 | MHC_00375 | MHC_00340 | MHC_00375 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.623 |
MHC_00340 | MHC_00380 | MHC_00340 | MHC_00380 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.623 |
MHC_00340 | dnaE | MHC_00340 | MHC_00350 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase III, alpha subunit. | 0.786 |
MHC_00340 | dnaX | MHC_00340 | MHC_00335 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.887 |
MHC_00340 | exo | MHC_00340 | MHC_00355 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 5'-3' exonuclease. | 0.799 |
MHC_00340 | lysS | MHC_00340 | MHC_00345 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.800 |
MHC_00340 | pth | MHC_00340 | MHC_00360 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.791 |
MHC_00340 | rpmF | MHC_00340 | MHC_00370 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.687 |
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