STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB4_4Type IV secretion system protein virB4. (802 aa)    
Predicted Functional Partners:
virB8_1
Type IV secretion system protein virB8.
 
 
 0.956
virB8_2
Type IV secretion system protein virB8.
 
 
 0.956
virB3_2
Type IV secretion system protein virB3.
  
 
 0.956
GCA_000241485_03853
Hypothetical protein.
 
 
 0.940
virB1_2
Type IV secretion system protein virB1.
 
   
 0.940
GCA_000241485_04258
Type IV secretion system protein virB10.
 
 
 0.932
GCA_000241485_04318
Type IV secretion system protein virB10.
 
 
 0.932
GCA_000241485_03855
Type IV secretion system protein virB10.
 
 
 0.925
virB6_2
Type IV secretion system protein VirB6.
 
 
 0.923
virB9_1
Type IV secretion system protein virB9.
 
 
 0.912
Your Current Organism:
Sphingomonas sp. PAMC26605
NCBI taxonomy Id: 1112214
Other names: S. sp. PAMC 26605, Sphingomonas sp. PAMC 26605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.