STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH79756.1Type VI secretion system protein ImpH. (342 aa)    
Predicted Functional Partners:
SFH79798.1
Type VI secretion protein, EvpB/VC_A0108 family/type VI secretion protein, VC_A0107 family.
 
 
 0.996
SFH79608.1
Type VI secretion system protein ImpA.
 
 
 0.989
SFH79675.1
Type VI secretion system secreted protein Hcp.
 
 
 0.988
SFH79717.1
Type VI secretion system protein ImpF.
 
  
 0.983
SFH79735.1
Type VI secretion system protein ImpG.
 
  
 0.979
SFH79964.1
Type VI secretion system protein ImpK.
 
  
 0.979
SFH79777.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 
 
 0.975
SFH79653.1
Type VI secretion system protein ImpC.
 
 
 0.973
SFH79695.1
Type VI secretion system protein ImpE.
 
    0.963
SFH79838.1
Type VI secretion system secreted protein VgrG.
 
 
 0.963
Your Current Organism:
Albimonas pacifica
NCBI taxonomy Id: 1114924
Other names: A. pacifica, Albimonas pacifica Li et al. 2013, CGMCC 1.11030, KACC 16527, Rhodobacteraceae bacterium P-50-3, strain P-50-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.