STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ30184.1Type IV secretion system protein VirD4. (575 aa)    
Predicted Functional Partners:
SFJ31894.1
Type IV secretion system protein VirB4.
 
  
 0.771
SFJ33253.1
Type IV secretion system protein VirB9.
 
   
 0.771
SFJ30162.1
Hypothetical protein.
       0.727
SFH85782.1
Antirestriction protein ArdC.
 
    0.714
SFJ27082.1
Replication initiator protein A.
  
     0.684
SFJ33225.1
Type IV secretion system protein VirB8.
 
   
 0.669
SFJ32201.1
Replication initiator protein A.
  
     0.668
SFJ26979.1
MobA/MobL family protein.
 
   
 0.662
SFJ30132.1
Replication initiator protein A.
  
     0.633
SFJ24452.1
Replication initiator protein A.
  
     0.630
Your Current Organism:
Albimonas pacifica
NCBI taxonomy Id: 1114924
Other names: A. pacifica, Albimonas pacifica Li et al. 2013, CGMCC 1.11030, KACC 16527, Rhodobacteraceae bacterium P-50-3, strain P-50-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.