STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL57228.1oppA protein. (500 aa)    
Predicted Functional Partners:
KRL53929.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
 0.923
KRL53930.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
 0.911
KRL53931.1
Oligopeptide abc transporter, atp-binding protein; Belongs to the ABC transporter superfamily.
 
 0.902
KRL53932.1
Oligopeptide abc transporter, atp-binding protein; Belongs to the ABC transporter superfamily.
 
 0.883
KRL53754.1
Oligopeptide ABC transporter, oligopeptide-binding protein.
  
  
 
0.764
KRL52741.1
Oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein.
 
 
 0.660
KRL52743.1
ABC-type dipeptide oligopeptide nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.626
KRL52740.1
Peptide ABC superfamily ATP binding cassette transporter, ABC protein.
 
 
 0.595
KRL52742.1
ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.587
KRL52739.1
ABC transporter, substrate-binding protein, family 5.
  
 
 0.561
Your Current Organism:
Lactobacillus rossiae
NCBI taxonomy Id: 1114972
Other names: L. rossiae DSM 15814, Lactobacillus rossiae DSM 15814, Lactobacillus rossiae str. DSM 15814, Lactobacillus rossiae strain DSM 15814
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