STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL53931.1Oligopeptide abc transporter, atp-binding protein; Belongs to the ABC transporter superfamily. (377 aa)    
Predicted Functional Partners:
KRL53930.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
 0.999
KRL53929.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 0.997
KRL52740.1
Peptide ABC superfamily ATP binding cassette transporter, ABC protein.
 
 0.996
KRL52741.1
Oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein.
 0.970
KRL53932.1
Oligopeptide abc transporter, atp-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.968
KRL53928.1
oppA protein.
 
 0.946
KRL53754.1
Oligopeptide ABC transporter, oligopeptide-binding protein.
 
 0.943
KRL53926.1
oppA protein.
 
 0.903
KRL57228.1
oppA protein.
 
 0.902
KRL53464.1
ABC-type oligopeptide transport system, periplasmic component.
 
 0.898
Your Current Organism:
Lactobacillus rossiae
NCBI taxonomy Id: 1114972
Other names: L. rossiae DSM 15814, Lactobacillus rossiae DSM 15814, Lactobacillus rossiae str. DSM 15814, Lactobacillus rossiae strain DSM 15814
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