STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL53847.1Hypothetical protein. (148 aa)    
Predicted Functional Partners:
KRL53846.1
Hypothetical protein.
 
     0.803
KRL57164.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
  0.743
cinA
Competence damage-inducible protein CinA; Belongs to the CinA family.
    
  0.737
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.545
KRL53845.1
Hypothetical protein.
       0.519
KRL53780.1
Transcription regulator.
  
 
  0.415
folE
GTP cyclohydrolase I.
  
 
 0.414
Your Current Organism:
Lactobacillus rossiae
NCBI taxonomy Id: 1114972
Other names: L. rossiae DSM 15814, Lactobacillus rossiae DSM 15814, Lactobacillus rossiae str. DSM 15814, Lactobacillus rossiae strain DSM 15814
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.