STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL56403.1ABC superfamily ATP binding cassette transporter, ABC protein. (219 aa)    
Predicted Functional Partners:
KRL56402.1
Antimicrobial peptide ABC transporter permease.
 
  0.987
KRL54386.1
Efflux ABC transporter, permease protein.
 
 0.952
KRL55051.1
Xenobiotic-transporting ATPase.
 
     
0.899
KRL54317.1
Hypothetical protein.
 
     
0.899
KRL56973.1
ABC transporter, ATP-binding and permease protein.
 
     
0.898
KRL54318.1
ABC transporter ATP-binding permease protein.
 
     
0.898
KRL56972.1
ABC transporter, ATP-binding and permease protein.
 
     
0.892
KRL56943.1
ABC transporter, ATP-binding protein.
 
  
 
0.813
KRL52967.1
Phosphonate-transporting ATPase.
  
 
0.741
KRL53930.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
 
    0.738
Your Current Organism:
Lactobacillus rossiae
NCBI taxonomy Id: 1114972
Other names: L. rossiae DSM 15814, Lactobacillus rossiae DSM 15814, Lactobacillus rossiae str. DSM 15814, Lactobacillus rossiae strain DSM 15814
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