STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL54472.1ABC transporter ATP-binding protein. (349 aa)    
Predicted Functional Partners:
KRL54473.1
ABC transporter permease.
 
 
 0.986
KRL56865.1
Hypothetical protein.
 0.981
KRL54475.1
ABC transporter, solute-binding protein.
 
 
 0.973
KRL54474.1
ABC superfamily ATP binding cassette transporter, permease protein.
 
 
  0.970
KRL52439.1
Spermidine putrescine ABC superfamily ATP binding cassette transporter, substrate binding protein.
 
 0.959
KRL52440.1
Spermidine putrescine ABC transporter, permease protein.
 
 0.956
KRL55051.1
Xenobiotic-transporting ATPase.
 
 
   
0.888
KRL56868.1
Hypothetical protein.
 
 
 0.885
KRL56866.1
Hypothetical protein.
 
 0.861
KRL53930.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
    0.853
Your Current Organism:
Lactobacillus rossiae
NCBI taxonomy Id: 1114972
Other names: L. rossiae DSM 15814, Lactobacillus rossiae DSM 15814, Lactobacillus rossiae str. DSM 15814, Lactobacillus rossiae strain DSM 15814
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