STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoADNA-directed RNA polymerase, alpha subunit. (353 aa)    
Predicted Functional Partners:
rpoBC
DNA-directed RNA polymerase, beta and beta' subunit.
  
 0.999
rpsD
Ribosomal protein S4.
 
 
 0.998
rpsK
Ribosomal protein S11.
 
 
 0.998
rpsM
Ribosomal protein S13.
  
 
 0.996
rpsC
Ribosomal protein S3.
  
 
 0.994
rpsE
Ribosomal protein S5.
 
 
 0.993
rpsJ
Ribosomal protein S10.
  
 
 0.992
nusA
Transcription termination protein NusA.
  
 
 0.990
rpsS
Ribosomal protein S19.
  
 
 0.990
rpsH
Ribosomal protein S8.
  
 
 0.990
Your Current Organism:
Mycoplasma haemominutum
NCBI taxonomy Id: 1116213
Other names: C. Mycoplasma haemominutum 'Birmingham 1', Candidatus Mycoplasma haemominutum 'Birmingham 1'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.