STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERG55666.1COG4392 Predicted membrane protein. (100 aa)    
Predicted Functional Partners:
ERG55665.1
Amino acid permease; COG1296 Predicted branched-chain amino acid permease (azaleucine resistance).
 
  
 0.988
ERG55664.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.900
ERG51584.1
Hypothetical protein; COG5595 Zn-ribbon-containing, possibly nucleic-acid-binding protein.
  
     0.589
ERG55138.1
Hypothetical protein.
  
     0.584
ERG51776.1
Lipoprotein; COG5633 Predicted periplasmic lipoprotein.
  
     0.556
ERG55663.1
Hypothetical protein; COG3658 Cytochrome b.
       0.521
ERG53438.1
Hypothetical protein; COG0285 Folylpolyglutamate synthase.
  
     0.474
ERG52570.1
Hypothetical protein.
 
     0.474
ERG55103.1
COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
     0.464
ERG53737.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.426
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
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