STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERG55336.1COG3979 Uncharacterized protein contain chitin-binding domain type 3. (564 aa)    
Predicted Functional Partners:
ERG55337.1
Fimh-like protein.
     0.972
ERG55338.1
Hypothetical protein.
 
     0.916
ERG55335.1
Hypothetical protein.
       0.793
ERG55334.1
Hypothetical protein.
 
     0.734
ERG51580.1
Hypothetical protein.
  
     0.690
ERG53289.1
Hypothetical protein; COG0582 Integrase.
  
     0.679
ERG52480.1
Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat.
  
     0.670
ERG52598.1
Hypothetical protein.
  
     0.621
kch-2
Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
  
     0.615
sseA
Putative thiosulfate sulfurtransferase SseA; COG2897 Rhodanese-related sulfurtransferase.
       0.593
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
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