STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERG55122.1COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (290 aa)    
Predicted Functional Partners:
ERG53795.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.723
ERG51720.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.710
ERG53876.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.684
ERG53727.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.674
ERG55121.1
COG3085 Uncharacterized protein conserved in bacteria.
 
     0.671
oxyR
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.657
ERG55668.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.656
aphB
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.648
ERG53169.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.642
ERG54059.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.638
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.