STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERG55247.1Hypothetical protein. (464 aa)    
Predicted Functional Partners:
ERG54056.1
Hypothetical protein.
 
  
 0.805
ERG54740.1
COG1585 Membrane protein implicated in regulation of membrane protease activity.
  
  
 0.747
ERG54404.1
Hypothetical protein.
  
     0.727
ERG54160.1
COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
  
     0.535
ERG53885.1
Peptidase S1 and S6, chymotrypsin/Hap.
  
    0.521
ERG55248.1
COG3068 Uncharacterized protein conserved in bacteria.
       0.520
pspA
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
  
 0.520
ERG53786.1
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
  
 0.520
pspA-2
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
  
 0.520
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
     0.516
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.