STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERG53796.1Hypothetical protein. (124 aa)    
Predicted Functional Partners:
ERG53795.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.666
ERG52525.1
Hypothetical protein; COG1357 Uncharacterized low-complexity proteins.
  
     0.546
ERG53090.1
Family 3 extracellular solute-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.505
ERG53406.1
Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.492
ERG51752.1
Alkyl hydroperoxide reductase; COG1225 Peroxiredoxin.
  
     0.438
ERG53119.1
Alkyl hydroperoxide reductase; COG1225 Peroxiredoxin.
  
     0.436
ERG55459.1
Hypothetical protein.
  
     0.429
ERG52809.1
Alpha/beta-hydrolase; COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold.
  
    0.417
ERG55185.1
Hypothetical protein.
  
     0.405
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.