STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hipOAmidohydrolase family protein; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase. (435 aa)    
Predicted Functional Partners:
pspE
Phage shock protein E; COG0607 Rhodanese-related sulfurtransferase.
       0.772
dapD-2
COG2171 Tetrahydrodipicolinate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
 
  
 0.600
ybbN
COG3118 Thioredoxin domain-containing protein.
  
    0.572
dapD
COG2171 Tetrahydrodipicolinate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
 
  
 0.568
metL
Bifunctional aspartate kinase II/homoserine dehydrogenase II; COG0527 Aspartokinases.
 
 
 
 0.402
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.