STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERG53077.1COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family. (605 aa)    
Predicted Functional Partners:
ERG53078.1
Hypothetical protein.
       0.779
colA
Microbial collagenase, secreted; COG3291 FOG: PKD repeat.
 
  
 0.755
ERG53679.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
 
 0.664
ERG51496.1
Hypothetical protein; COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
 
 
 
0.654
ERG52038.1
COG5640 Secreted trypsin-like serine protease.
 
 
 
 0.653
ERG53548.1
COG3220 Uncharacterized protein conserved in bacteria.
   
    0.628
colA-2
Collagenase.
 
  
 0.624
ERG52691.1
COG3325 Chitinase.
 
 
 0.621
ERG52879.1
Peptidase S1 and S6, chymotrypsin/Hap; COG5640 Secreted trypsin-like serine protease.
 
 
 
 0.602
colA-3
Collagenase.
 
  
 0.566
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
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