STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERG52838.1Hypothetical protein. (143 aa)    
Predicted Functional Partners:
ERG52839.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
 0.977
ERG52840.1
Hypothetical protein; COG2907 Predicted NAD/FAD-binding protein.
 
   
 0.971
ERG52841.1
Hypothetical protein.
 
   
 0.953
ERG52845.1
Hypothetical protein.
 
     0.952
ERG52844.1
Hypothetical protein.
 
     0.934
cfa
COG2230 Cyclopropane fatty acid synthase and related methyltransferases.
 
     0.923
chrR
Putative transcriptional activator; COG3806 Anti-sigma factor.
 
     0.917
phrB-3
COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
     0.910
rpoE-10
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.909
ERG52836.1
Hypothetical protein.
  
  
 0.899
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.