STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilBType IV pilus biogenesis protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. (560 aa)    
Predicted Functional Partners:
pilC
Type IV pilus biogenesis protein C; COG1459 Type II secretory pathway, component PulF.
 
 
 0.969
pilD
Leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.930
gspF
General secretion pathway protein F; COG1459 Type II secretory pathway, component PulF.
 
 
 0.929
mshG
Mannose-sensitive agglutinin biogenesis protein MshG; COG1459 Type II secretory pathway, component PulF.
 
 
 0.929
gspF-2
Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.
 
 
 0.929
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.785
yacG
Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
       0.781
ERG52805.1
COG4969 Tfp pilus assembly protein, major pilin PilA.
 
 
 0.694
pilQ
Type IV pilus biogenesis protein PilQ (cytoplasmic ATPase); COG4796 Type II secretory pathway, component HofQ.
 
 
 
 0.692
pilM
COG4972 Tfp pilus assembly protein, ATPase PilM.
 
 
 
 0.674
Your Current Organism:
Pseudoalteromonas spongiae
NCBI taxonomy Id: 1117319
Other names: P. spongiae UST010723-006, Pseudoalteromonas spongiae UST010723-006
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