STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M5M_02050Hypothetical protein. (94 aa)    
Predicted Functional Partners:
M5M_02055
COG1560 Lauroyl/myristoyl acyltransferase.
       0.773
rapA
ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
       0.771
M5M_02035
COG2086 Electron transfer flavoprotein, beta subunit.
       0.489
M5M_02040
COG2025 Electron transfer flavoprotein, alpha subunit.
       0.489
Your Current Organism:
Simiduia agarivorans
NCBI taxonomy Id: 1117647
Other names: S. agarivorans SA1 = DSM 21679, Simiduia agarivorans DSM 21679, Simiduia agarivorans DSM 21679 = SA1, Simiduia agarivorans SA1, Simiduia agarivorans SA1 = DSM 21679
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.