STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M5M_15195Major facilitator superfamily transporter; COG2223 Nitrate/nitrite transporter. (491 aa)    
Predicted Functional Partners:
narG
COG5013 Nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.962
M5M_15795
COG2181 Nitrate reductase gamma subunit.
 
 
 0.950
M5M_15190
COG2223 Nitrate/nitrite transporter.
 
  
 
0.947
narH
COG1140 Nitrate reductase beta subunit.
  
 
 0.947
M5M_06265
Nitrite reductase [NAD(P)H] large subunit; COG1251 NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 
 0.940
M5M_06260
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
 
 0.936
M5M_06275
Nitrate reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.933
M5M_06540
NAD(FAD)-dependent dehydrogenase; COG1251 NAD(P)H-nitrite reductase.
 
 
 0.927
M5M_15750
COG2223 Nitrate/nitrite transporter.
 
  
  0.922
napA
Nitrate reductase catalytic subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.909
Your Current Organism:
Simiduia agarivorans
NCBI taxonomy Id: 1117647
Other names: S. agarivorans SA1 = DSM 21679, Simiduia agarivorans DSM 21679, Simiduia agarivorans DSM 21679 = SA1, Simiduia agarivorans SA1, Simiduia agarivorans SA1 = DSM 21679
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