STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO54431.1Hypothetical protein; BRO family, N-terminal domain. (257 aa)    
Predicted Functional Partners:
SHO58451.1
DNA damage-inducible protein YebG.
   
  
 0.525
SHO54377.1
Phage antirepressor protein KilAC domain protein.
 
     0.514
prtR_2
HTH-type transcriptional regulator PrtR.
 
  
 0.462
SHO54430.1
Hypothetical protein.
       0.413
prtR_1
HTH-type transcriptional regulator PrtR.
 
  
 0.402
Your Current Organism:
Vibrio quintilis
NCBI taxonomy Id: 1117707
Other names: CECT 7734, KCTC 23833, V. quintilis, Vibrio quintilis Lucena et al. 2013, Vibrio sp. CECT 7734, strain M62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.