STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO55066.1Putative acetyltransferase. (236 aa)    
Predicted Functional Partners:
tuaH
Putative teichuronic acid biosynthesis glycosyltransferase TuaH.
 
  
 0.871
SHO55064.1
Putative tyrosine-protein kinase in cps region.
 
  
 0.865
SHO55068.1
Polysaccharide biosynthesis protein.
 
  
 0.863
vioA
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.848
pglE
UDP-N-acetylbacillosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.848
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.827
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
 0.811
wecA_1
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
 
  
 0.790
SHO55067.1
O-Antigen ligase.
 
     0.768
pimB
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase.
 
  
 0.719
Your Current Organism:
Vibrio quintilis
NCBI taxonomy Id: 1117707
Other names: CECT 7734, KCTC 23833, V. quintilis, Vibrio quintilis Lucena et al. 2013, Vibrio sp. CECT 7734, strain M62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.