STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO55083.1Hypothetical protein. (248 aa)    
Predicted Functional Partners:
lolE_1
Lipoprotein-releasing system transmembrane protein LolE.
 
 
 
 0.975
ytrF_1
ABC transporter permease YtrF precursor.
 
 
 
 0.975
SHO55087.1
Hypothetical protein.
 
     0.952
yxdL
ABC transporter ATP-binding protein YxdL.
 
 
 
 0.951
lpp
Major outer membrane lipoprotein Lpp precursor.
    
 
 0.896
amiB
N-acetylmuramoyl-L-alanine amidase AmiB precursor.
   
   0.855
lolE_3
Lipoprotein-releasing system transmembrane protein LolE.
 
 
 
 0.738
oprF_1
Outer membrane porin F precursor.
 
 
 0.697
macB_7
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
 
 0.657
lolC
Lipoprotein-releasing system transmembrane protein LolC.
 
 
 
 0.628
Your Current Organism:
Vibrio quintilis
NCBI taxonomy Id: 1117707
Other names: CECT 7734, KCTC 23833, V. quintilis, Vibrio quintilis Lucena et al. 2013, Vibrio sp. CECT 7734, strain M62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.