Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
bglF_1 | ptsG_3 | VQ7734_01136 | VQ7734_04289 | PTS system beta-glucoside-specific EIIBCA component. | PTS system glucose-specific EIICB component. | 0.997 |
bglF_1 | xylR_1 | VQ7734_01136 | VQ7734_01274 | PTS system beta-glucoside-specific EIIBCA component. | Xylose operon regulatory protein. | 0.827 |
gltB_1 | gltB_3 | VQ7734_02463 | VQ7734_02465 | Ferredoxin-dependent glutamate synthase 1. | Glutamate synthase [NADPH] large chain precursor. | 0.999 |
gltB_1 | xylR_1 | VQ7734_02463 | VQ7734_01274 | Ferredoxin-dependent glutamate synthase 1. | Xylose operon regulatory protein. | 0.963 |
gltB_3 | gltB_1 | VQ7734_02465 | VQ7734_02463 | Glutamate synthase [NADPH] large chain precursor. | Ferredoxin-dependent glutamate synthase 1. | 0.999 |
gltB_3 | xylR_1 | VQ7734_02465 | VQ7734_01274 | Glutamate synthase [NADPH] large chain precursor. | Xylose operon regulatory protein. | 0.963 |
ptsG_3 | bglF_1 | VQ7734_04289 | VQ7734_01136 | PTS system glucose-specific EIICB component. | PTS system beta-glucoside-specific EIIBCA component. | 0.997 |
ptsG_3 | xylR_1 | VQ7734_04289 | VQ7734_01274 | PTS system glucose-specific EIICB component. | Xylose operon regulatory protein. | 0.691 |
ribBA | rpoB | VQ7734_04261 | VQ7734_01520 | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.603 |
ribBA | xylR_1 | VQ7734_04261 | VQ7734_01274 | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | Xylose operon regulatory protein. | 0.798 |
rpoA | rpoB | VQ7734_00549 | VQ7734_01520 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | xylR_1 | VQ7734_00549 | VQ7734_01274 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Xylose operon regulatory protein. | 0.906 |
rpoB | ribBA | VQ7734_01520 | VQ7734_04261 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.603 |
rpoB | rpoA | VQ7734_01520 | VQ7734_00549 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoB | xylR_1 | VQ7734_01520 | VQ7734_01274 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Xylose operon regulatory protein. | 0.814 |
srfAC | xylR_1 | VQ7734_00166 | VQ7734_01274 | Surfactin synthase subunit 3. | Xylose operon regulatory protein. | 0.914 |
xylA | xylB | VQ7734_01143 | VQ7734_01273 | Xylose isomerase; Belongs to the xylose isomerase family. | Xylulose kinase. | 0.927 |
xylA | xylR_1 | VQ7734_01143 | VQ7734_01274 | Xylose isomerase; Belongs to the xylose isomerase family. | Xylose operon regulatory protein. | 0.726 |
xylB | xylA | VQ7734_01273 | VQ7734_01143 | Xylulose kinase. | Xylose isomerase; Belongs to the xylose isomerase family. | 0.927 |
xylB | xylR_1 | VQ7734_01273 | VQ7734_01274 | Xylulose kinase. | Xylose operon regulatory protein. | 0.804 |
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