Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO55639.1 | SHO55640.1 | VQ7734_01385 | VQ7734_01386 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SHO55639.1 | SHO55642.1 | VQ7734_01385 | VQ7734_01388 | Hypothetical protein. | Hypothetical protein. | 0.657 |
SHO55639.1 | SHO55643.1 | VQ7734_01385 | VQ7734_01389 | Hypothetical protein. | HrpF protein. | 0.657 |
SHO55639.1 | SHO55644.1 | VQ7734_01385 | VQ7734_01390 | Hypothetical protein. | DspF/AvrF protein. | 0.545 |
SHO55639.1 | hemN_3 | VQ7734_01385 | VQ7734_01383 | Hypothetical protein. | Oxygen-independent coproporphyrinogen-III oxidase 1; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.532 |
SHO55639.1 | rdgB | VQ7734_01385 | VQ7734_01384 | Hypothetical protein. | dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.532 |
SHO55639.1 | spiA | VQ7734_01385 | VQ7734_01387 | Hypothetical protein. | Type III secretion system outer membrane protein SpiA precursor. | 0.732 |
SHO55640.1 | SHO55639.1 | VQ7734_01386 | VQ7734_01385 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SHO55640.1 | SHO55642.1 | VQ7734_01386 | VQ7734_01388 | Hypothetical protein. | Hypothetical protein. | 0.657 |
SHO55640.1 | SHO55643.1 | VQ7734_01386 | VQ7734_01389 | Hypothetical protein. | HrpF protein. | 0.657 |
SHO55640.1 | SHO55644.1 | VQ7734_01386 | VQ7734_01390 | Hypothetical protein. | DspF/AvrF protein. | 0.545 |
SHO55640.1 | hemN_3 | VQ7734_01386 | VQ7734_01383 | Hypothetical protein. | Oxygen-independent coproporphyrinogen-III oxidase 1; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.532 |
SHO55640.1 | rdgB | VQ7734_01386 | VQ7734_01384 | Hypothetical protein. | dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.532 |
SHO55640.1 | spiA | VQ7734_01386 | VQ7734_01387 | Hypothetical protein. | Type III secretion system outer membrane protein SpiA precursor. | 0.732 |
SHO55642.1 | SHO55639.1 | VQ7734_01388 | VQ7734_01385 | Hypothetical protein. | Hypothetical protein. | 0.657 |
SHO55642.1 | SHO55640.1 | VQ7734_01388 | VQ7734_01386 | Hypothetical protein. | Hypothetical protein. | 0.657 |
SHO55642.1 | SHO55643.1 | VQ7734_01388 | VQ7734_01389 | Hypothetical protein. | HrpF protein. | 0.773 |
SHO55642.1 | SHO55644.1 | VQ7734_01388 | VQ7734_01390 | Hypothetical protein. | DspF/AvrF protein. | 0.636 |
SHO55642.1 | hemN_3 | VQ7734_01388 | VQ7734_01383 | Hypothetical protein. | Oxygen-independent coproporphyrinogen-III oxidase 1; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.460 |
SHO55642.1 | rdgB | VQ7734_01388 | VQ7734_01384 | Hypothetical protein. | dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.460 |
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