Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO55000.1 | SHO56084.1 | VQ7734_00719 | VQ7734_01847 | SnoaL-like domain protein. | EthD protein. | 0.450 |
SHO56084.1 | SHO55000.1 | VQ7734_01847 | VQ7734_00719 | EthD protein. | SnoaL-like domain protein. | 0.450 |
SHO56084.1 | SHO56085.1 | VQ7734_01847 | VQ7734_01848 | EthD protein. | Hypothetical protein. | 0.436 |
SHO56084.1 | fadH | VQ7734_01847 | VQ7734_01844 | EthD protein. | Putative 2,4-dienoyl-CoA reductase. | 0.423 |
SHO56084.1 | glgC_1 | VQ7734_01847 | VQ7734_01188 | EthD protein. | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | 0.481 |
SHO56084.1 | glgC_2 | VQ7734_01847 | VQ7734_04987 | EthD protein. | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | 0.481 |
SHO56084.1 | gltB_1 | VQ7734_01847 | VQ7734_02463 | EthD protein. | Ferredoxin-dependent glutamate synthase 1. | 0.481 |
SHO56084.1 | gltB_3 | VQ7734_01847 | VQ7734_02465 | EthD protein. | Glutamate synthase [NADPH] large chain precursor. | 0.481 |
SHO56084.1 | merR1 | VQ7734_01847 | VQ7734_01846 | EthD protein. | Mercuric resistance operon regulatory protein. | 0.564 |
SHO56084.1 | pdxH | VQ7734_01847 | VQ7734_00260 | EthD protein. | Pyridoxine/pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.444 |
SHO56084.1 | ydjP | VQ7734_01847 | VQ7734_01845 | EthD protein. | AB hydrolase superfamily protein YdjP. | 0.571 |
SHO56085.1 | SHO56084.1 | VQ7734_01848 | VQ7734_01847 | Hypothetical protein. | EthD protein. | 0.436 |
fadH | SHO56084.1 | VQ7734_01844 | VQ7734_01847 | Putative 2,4-dienoyl-CoA reductase. | EthD protein. | 0.423 |
fadH | gltB_1 | VQ7734_01844 | VQ7734_02463 | Putative 2,4-dienoyl-CoA reductase. | Ferredoxin-dependent glutamate synthase 1. | 0.802 |
fadH | gltB_3 | VQ7734_01844 | VQ7734_02465 | Putative 2,4-dienoyl-CoA reductase. | Glutamate synthase [NADPH] large chain precursor. | 0.802 |
fadH | merR1 | VQ7734_01844 | VQ7734_01846 | Putative 2,4-dienoyl-CoA reductase. | Mercuric resistance operon regulatory protein. | 0.402 |
fadH | ydjP | VQ7734_01844 | VQ7734_01845 | Putative 2,4-dienoyl-CoA reductase. | AB hydrolase superfamily protein YdjP. | 0.688 |
glgC_1 | SHO56084.1 | VQ7734_01188 | VQ7734_01847 | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | EthD protein. | 0.481 |
glgC_2 | SHO56084.1 | VQ7734_04987 | VQ7734_01847 | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | EthD protein. | 0.481 |
gltB_1 | SHO56084.1 | VQ7734_02463 | VQ7734_01847 | Ferredoxin-dependent glutamate synthase 1. | EthD protein. | 0.481 |
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