STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB_2Endo-1,4-beta-xylanase B precursor. (628 aa)    
Predicted Functional Partners:
pemA_1
Pectinesterase A precursor.
 
 0.974
xynC_2
Alpha-L-arabinofuranosidase C precursor.
 
 0.971
celZ
Endoglucanase Z precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.955
xynC_1
Glucuronoxylanase XynC precursor; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.954
manA_3
Mannan endo-1,4-beta-mannosidase precursor.
 
 
 0.954
celC_1
Endoglucanase C precursor.
 
 
 0.953
SHO57382.1
Polysaccharide deacetylase.
 
  
 0.949
xsa
Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
 0.947
pelA_1
Pectate trisaccharide-lyase precursor.
 
 
 0.943
pelA_5
Pectate lyase A precursor.
 
 0.939
Your Current Organism:
Vibrio quintilis
NCBI taxonomy Id: 1117707
Other names: CECT 7734, KCTC 23833, V. quintilis, Vibrio quintilis Lucena et al. 2013, Vibrio sp. CECT 7734, strain M62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.