STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO56836.1Tripartite ATP-independent periplasmic transporters, DctQ component. (206 aa)    
Predicted Functional Partners:
SHO56837.1
Lactate-binding periplasmic protein precursor.
 
 
 0.983
siaT_4
Sialic acid TRAP transporter permease protein SiaT.
 
  
  0.971
siaT_7
Sialic acid TRAP transporter permease protein SiaT.
 
 0.770
siaT_2
Sialic acid TRAP transporter permease protein SiaT.
 
 0.764
yiaO_3
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
 
 0.743
dctP_1
C4-dicarboxylate-binding periplasmic protein precursor.
 
 
 0.706
siaT_3
Sialic acid TRAP transporter permease protein SiaT.
  
 0.705
siaT_5
Sialic acid TRAP transporter permease protein SiaT.
  
 0.705
siaT_6
Sialic acid TRAP transporter permease protein SiaT.
  
 0.705
yiaO_1
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
 
 0.675
Your Current Organism:
Vibrio quintilis
NCBI taxonomy Id: 1117707
Other names: CECT 7734, KCTC 23833, V. quintilis, Vibrio quintilis Lucena et al. 2013, Vibrio sp. CECT 7734, strain M62
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.