Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO56363.1 | SHO56884.1 | VQ7734_02132 | VQ7734_02653 | Putative FAD-linked oxidoreductase. | Hypothetical protein. | 0.698 |
SHO56363.1 | fumB | VQ7734_02132 | VQ7734_04825 | Putative FAD-linked oxidoreductase. | Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.830 |
SHO56363.1 | gcvP | VQ7734_02132 | VQ7734_03728 | Putative FAD-linked oxidoreductase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.816 |
SHO56363.1 | nadE_1 | VQ7734_02132 | VQ7734_00720 | Putative FAD-linked oxidoreductase. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.557 |
SHO56884.1 | SHO56363.1 | VQ7734_02653 | VQ7734_02132 | Hypothetical protein. | Putative FAD-linked oxidoreductase. | 0.698 |
SHO56884.1 | cph2_3 | VQ7734_02653 | VQ7734_02849 | Hypothetical protein. | Phytochrome-like protein cph2. | 0.684 |
SHO56884.1 | folE | VQ7734_02653 | VQ7734_05143 | Hypothetical protein. | GTP cyclohydrolase 1. | 0.649 |
SHO56884.1 | fumB | VQ7734_02653 | VQ7734_04825 | Hypothetical protein. | Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.744 |
SHO56884.1 | gcvP | VQ7734_02653 | VQ7734_03728 | Hypothetical protein. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.756 |
SHO56884.1 | guaA | VQ7734_02653 | VQ7734_03854 | Hypothetical protein. | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | 0.697 |
SHO56884.1 | metH | VQ7734_02653 | VQ7734_01321 | Hypothetical protein. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.778 |
SHO56884.1 | nadE_1 | VQ7734_02653 | VQ7734_00720 | Hypothetical protein. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.894 |
SHO56884.1 | nudG | VQ7734_02653 | VQ7734_04036 | Hypothetical protein. | CTP pyrophosphohydrolase; Belongs to the Nudix hydrolase family. | 0.771 |
SHO56884.1 | ribBA | VQ7734_02653 | VQ7734_04261 | Hypothetical protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.716 |
cph2_3 | SHO56884.1 | VQ7734_02849 | VQ7734_02653 | Phytochrome-like protein cph2. | Hypothetical protein. | 0.684 |
cph2_3 | folE | VQ7734_02849 | VQ7734_05143 | Phytochrome-like protein cph2. | GTP cyclohydrolase 1. | 0.750 |
cph2_3 | guaA | VQ7734_02849 | VQ7734_03854 | Phytochrome-like protein cph2. | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | 0.813 |
cph2_3 | metH | VQ7734_02849 | VQ7734_01321 | Phytochrome-like protein cph2. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.757 |
cph2_3 | nudG | VQ7734_02849 | VQ7734_04036 | Phytochrome-like protein cph2. | CTP pyrophosphohydrolase; Belongs to the Nudix hydrolase family. | 0.654 |
cph2_3 | ribBA | VQ7734_02849 | VQ7734_04261 | Phytochrome-like protein cph2. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.782 |
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