STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO57863.1Hypothetical protein. (170 aa)    
Predicted Functional Partners:
SHO58779.1
Prokaryotic dksA/traR C4-type zinc finger.
   
    0.816
SHO57859.1
Phage regulatory protein CII (CP76).
   
    0.589
SHO57104.1
Bacteriophage CI repressor helix-turn-helix domain protein.
   
    0.579
SHO58149.1
Bacteriophage CI repressor helix-turn-helix domain protein.
   
    0.579
SHO56395.1
Type I restriction enzyme EcoKI subunit R.
   
    0.571
SHO58746.1
Type III restriction enzyme, res subunit.
   
    0.571
SHO57864.1
Bacteriophage replication gene A protein (GPA).
  
    0.570
SHO56269.1
Type III restriction enzyme, res subunit.
   
    0.548
SHO54371.1
Hypothetical protein.
   
    0.520
SHO55112.1
Peptidase S24-like protein.
   
    0.519
Your Current Organism:
Vibrio quintilis
NCBI taxonomy Id: 1117707
Other names: CECT 7734, KCTC 23833, V. quintilis, Vibrio quintilis Lucena et al. 2013, Vibrio sp. CECT 7734, strain M62
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