STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ35081.1TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; InterPro IPR006339; KEGG: syn:sll0359 hypothetical protein; SPTR: Transcriptional regulator, AbrB family protein; TIGRFAM: Transcription regulator AbrB. (133 aa)    
Predicted Functional Partners:
AFZ34178.1
KEGG: mar:MAE_24360 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.770
AFZ34937.1
PFAM: Protein of unknown function (DUF3288); KEGG: mar:MAE_44990 hypothetical protein; SPTR: Similar to tr|Q8YVL3|Q8YVL3.
  
     0.770
ndhO
NAD(P)H-quinone oxidoreductase subunit O; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.770
AFZ36533.1
PFAM: POTRA domain, FtsQ-type; COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: cyc:PCC7424_5024 polypeptide-transport-associated domain protein FtsQ-type; PFAM: Polypeptide-transport-associated, FtsQ-type; SPTR: Polypeptide-transport-associated domain protein FtsQ-type.
  
     0.768
AFZ33954.1
PFAM: CO2 hydration protein (ChpXY); TIGRFAM: CO2 hydration protein; InterPro IPR010220; KEGG: cyc:PCC7424_1376 CO2 hydration protein; PFAM: CO2 hydration; SPTR: CO2 hydration protein; TIGRFAM: CO2 hydration.
  
     0.767
AFZ35820.1
PFAM: Protein of unknown function (DUF2839); KEGG: cyh:Cyan8802_0653 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.767
AFZ37355.1
KEGG: cyc:PCC7424_3505 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.767
AFZ37239.1
KEGG: npu:Npun_R2926 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.766
AFZ36804.1
KEGG: cyt:cce_1724 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.761
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.760
Your Current Organism:
Stanieria cyanosphaera
NCBI taxonomy Id: 111780
Other names: Dermocarpa sp. PCC 7437, S. cyanosphaera PCC 7437, Stanieria cyanosphaera PCC 7437, Stanieria cyanosphaera str. PCC 7437, Stanieria sp. ATCC 29371, Stanieria sp. PCC 7437
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