Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFY39434.1Single-stranded nucleic acid binding R3H domain-containing protein; PFAM: R3H domain; COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: syp:SYNPCC7002_A0992 RNA-binding protein; PFAM: Single-stranded nucleic acid binding R3H; SMART: Single-stranded nucleic acid binding R3H; SPTR: Predicted RNA-binding protein. (163 aa)    
Predicted Functional Partners:
AFY39435.1
PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR020001:IPR001708; KEGG: syp:SYNPCC7002_A0991 putative inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein YidC/OxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC, core.
  
  
 0.958
AFY40371.1
COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: syp:SYNPCC7002_A0519 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.901
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
  
 0.835
AFY37850.1
PFAM: Ribonuclease E/G family; TIGRFAM: ribonuclease, Rne/Rng family; COGs: COG1530 Ribonuclease G and E; InterPro IPR003029:IPR019307:IPR004659; KEGG: syp:SYNPCC7002_A0788 ribonuclease E; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; PRIAM: Ribonuclease E; SPTR: Ribonuclease E; TIGRFAM: Ribonuclease E/G.
   
 
 0.744
AFY36688.1
UPF0161 protein yidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.680
rsmG
16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.625
rplB
LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
    0.606
AFY39436.1
KEGG: syp:SYNPCC7002_A0990 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.585
AFY39433.1
Protein of unknown function DUF177; PFAM: Uncharacterized ACR, COG1399; COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: syp:SYNPCC7002_A0993 hypothetical protein; PFAM: Protein of unknown function DUF177; SPTR: Putative uncharacterized protein.
       0.583
rpmH
PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: syp:SYNPCC7002_A0988 50S ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.566
Your Current Organism:
Leptolyngbya sp. PCC7376
NCBI taxonomy Id: 111781
Other names: Enugrolinea bermudensis PCC 7376, L. sp. PCC 7376, Leptolyngbya PCC7376, Leptolyngbya sp. PCC 7376
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