STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCE95411.1Peptidase, U32 family. (325 aa)    
Predicted Functional Partners:
CCE95410.1
Hypothetical protein; Collagenase and related proteases.
 
 
 0.992
CCE95412.1
Putative lipid carrier protein.
 
  
 0.965
CCE95409.1
Hypothetical protein.
       0.800
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
 
    0.785
CCE95408.1
Hypothetical protein.
       0.766
CCE95407.1
Hypothetical protein.
       0.762
uspA
Uncharacterized protein Mb2028c.
  
    0.655
CCE96309.1
Methyltransferase, homolog.
  
  
 0.627
nnrS
Putative uncharacterized protein involved in response to NO.
 
    0.523
hemN
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.457
Your Current Organism:
Sinorhizobium fredii HH103
NCBI taxonomy Id: 1117943
Other names: S. fredii HH103, Sinorhizobium fredii str. HH103, Sinorhizobium fredii strain HH103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.